Fits the Linear Mixed Model

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Documentation for package ‘asreml’ version 4.1.0.106

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A B C D E F G H I K L M N O P R S T U V W

-- A --

aexp Metric based models in two dimensions.
aexph Metric based models in two dimensions.
aexpv Metric based models in two dimensions.
agau Metric based models in two dimensions.
agauh Metric based models in two dimensions.
agauv Metric based models in two dimensions.
ainverse Calculate an inverse relationship matrix.
and Model term constructor functions.
ante General structure variance models.
ar1 Time series type variance models.
ar1h Time series type variance models.
ar1v Time series type variance models.
ar2 Time series type variance models.
ar2h Time series type variance models.
ar2v Time series type variance models.
ar3 Time series type variance models.
ar3h Time series type variance models.
ar3v Time series type variance models.
arma Time series type variance models.
armah Time series type variance models.
armav Time series type variance models.
asreml Fit the linear mixed model.
asreml.license.activate Activates an asreml license.
asreml.license.offline Request an asreml license to be used offline.
asreml.license.online Request an asreml license to be used online
asreml.license.status Check the status of the asreml license.
asreml.object ASReml object
asreml.options Set asreml options.
asreml.read.table Read in a data frame.
asr_aexp Metric based models in two dimensions.
asr_aexph Metric based models in two dimensions.
asr_aexpv Metric based models in two dimensions.
asr_agau Metric based models in two dimensions.
asr_agauh Metric based models in two dimensions.
asr_agauv Metric based models in two dimensions.
asr_and Model term constructor functions.
asr_ante General structure variance models.
asr_ar1 Time series type variance models.
asr_ar1h Time series type variance models.
asr_ar1v Time series type variance models.
asr_ar2 Time series type variance models.
asr_ar2h Time series type variance models.
asr_ar2v Time series type variance models.
asr_ar3 Time series type variance models.
asr_ar3h Time series type variance models.
asr_ar3v Time series type variance models.
asr_arma Time series type variance models.
asr_armah Time series type variance models.
asr_armav Time series type variance models.
asr_at Model term constructor functions.
asr_binomial GLM family objects for asreml.
asr_C Model term constructor functions.
asr_chol General structure variance models.
asr_cir Metric based models in two dimensions.
asr_cirh Metric based models in two dimensions.
asr_cirv Metric based models in two dimensions.
asr_con Model term constructor functions.
asr_cor General structure variance models.
asr_corb General structure variance models.
asr_corbh General structure variance models.
asr_corbv General structure variance models.
asr_corg General structure variance models.
asr_corgh General structure variance models.
asr_corgv General structure variance models.
asr_corh General structure variance models.
asr_corv General structure variance models.
asr_dev Model term constructor functions.
asr_diag General structure variance models.
asr_dsum Model term constructor functions.
asr_exp Metric based models in one dimension.
asr_exph Metric based models in one dimension.
asr_expv Metric based models in one dimension.
asr_fa General structure variance models.
asr_facv General structure variance models.
asr_families GLM family objects for asreml.
asr_Gamma GLM family objects for asreml.
asr_gau Metric based models in one dimension.
asr_gauh Metric based models in one dimension.
asr_gaussian GLM family objects for asreml.
asr_gauv Metric based models in one dimension.
asr_grp Model term constructor functions.
asr_id Default identity variance models.
asr_ide Known variance structures.
asr_idh Default identity variance models.
asr_idv Default identity variance models.
asr_ieuc Metric based models in two dimensions.
asr_ieuch Metric based models in two dimensions.
asr_ieucv Metric based models in two dimensions.
asr_iexp Metric based models in two dimensions.
asr_iexph Metric based models in two dimensions.
asr_iexpv Metric based models in two dimensions.
asr_igau Metric based models in two dimensions.
asr_igauh Metric based models in two dimensions.
asr_igauv Metric based models in two dimensions.
asr_ilv Metric based models in two dimensions.
asr_ilvh Metric based models in two dimensions.
asr_ilvv Metric based models in two dimensions.
asr_inverse.gaussian GLM family objects for asreml.
asr_leg Model term constructor functions.
asr_lin Model term constructor functions.
asr_lvr Metric based models in one dimension.
asr_lvrh Metric based models in one dimension.
asr_lvrv Metric based models in one dimension.
asr_ma Model term constructor functions.
asr_ma1 Time series type variance models.
asr_ma1h Time series type variance models.
asr_ma1v Time series type variance models.
asr_ma2 Time series type variance models.
asr_ma2h Time series type variance models.
asr_ma2v Time series type variance models.
asr_mbf Model term constructor functions.
asr_mtrn Matern variance structure.
asr_mtrnh Matern variance structure.
asr_mtrnv Matern variance structure.
asr_multinomial GLM family objects for asreml.
asr_negative.binomial GLM family objects for asreml.
asr_own User-defined variance models.
asr_poisson GLM family objects for asreml.
asr_pol Model term constructor functions.
asr_pow Model term constructor functions.
asr_rr General structure variance models.
asr_sar Time series type variance models.
asr_sar2 Time series type variance models.
asr_sar2h Time series type variance models.
asr_sar2v Time series type variance models.
asr_sarh Time series type variance models.
asr_sarv Time series type variance models.
asr_sfa General structure variance models.
asr_sph Metric based models in two dimensions.
asr_sphh Metric based models in two dimensions.
asr_sphv Metric based models in two dimensions.
asr_spl Model term constructor functions.
asr_str General variance structures.
asr_us General structure variance models.
asr_varioGram Empirical variogram.
asr_vm Known variance structures.
asuv Univariate data frame.
asv Approximate stratum variances method.
asv.asreml Approximate stratum variances.
at Model term constructor functions.

-- B --

binnor Footrot scores on lambs.

-- C --

C Model term constructor functions.
captions Axis captions
cheese Cheese tasting.
cheese.cat Cheese tasting incidence.
chol General structure variance models.
cir Metric based models in two dimensions.
cirh Metric based models in two dimensions.
cirv Metric based models in two dimensions.
coef Extract model coefficients
coef.asreml Extract model coefficients
con Model term constructor functions.
cor General structure variance models.
corb General structure variance models.
corbh General structure variance models.
corbv General structure variance models.
corg General structure variance models.
corgh General structure variance models.
corgv General structure variance models.
corh General structure variance models.
corv General structure variance models.

-- D --

dev Model term constructor functions.
diag General structure variance models.
dsum Model term constructor functions.

-- E --

ebay Nested correlated observations.
exp Metric based models in one dimension.
exph Metric based models in one dimension.
expv Metric based models in one dimension.

-- F --

fa General structure variance models.
fa.init Factor analytic initial values
facv General structure variance models.
fitted.asreml Extract fitted values.

-- G --

gau Metric based models in one dimension.
gauh Metric based models in one dimension.
gauv Metric based models in one dimension.
grass Plant height
grassUV Plant height (univariate form)
grp Model term constructor functions.

-- H --

harvey Weights of cattle.
harvey.ped Pedigree of cattle.
harveyg.ped Pedigree of cattle.

-- I --

id Default identity variance models.
ide Known variance structures.
idh Default identity variance models.
idv Default identity variance models.
ieuc Metric based models in two dimensions.
ieuch Metric based models in two dimensions.
ieucv Metric based models in two dimensions.
iexp Metric based models in two dimensions.
iexph Metric based models in two dimensions.
iexpv Metric based models in two dimensions.
igau Metric based models in two dimensions.
igauh Metric based models in two dimensions.
igauv Metric based models in two dimensions.
ilv Metric based models in two dimensions.
ilvh Metric based models in two dimensions.
ilvv Metric based models in two dimensions.

-- K --

knownStruc Known variance structures.

-- L --

lamb Footrot counts on lambs.
leg Model term constructor functions.
Levels Combine factor levels.
lin Model term constructor functions.
lrt Likelihood ratio tests.
lrt.asreml REML Likelihood ratio tests
lsasr Asreml object size.
lvr Metric based models in one dimension.
lvrh Metric based models in one dimension.
lvrv Metric based models in one dimension.

-- M --

ma Model term constructor functions.
ma1 Time series type variance models.
ma1h Time series type variance models.
ma1v Time series type variance models.
ma2 Time series type variance models.
ma2h Time series type variance models.
ma2v Time series type variance models.
matern Matern variance structure.
mbf Model term constructor functions.
meff Marker effects.
meff.asreml Marker effects.
metric-1d Metric based models in one dimension.
metric-2d Metric based models in two dimensions.
modelFunctions Model term constructor functions.
mtrn Matern variance structure.
mtrnh Matern variance structure.
mtrnv Matern variance structure.

-- N --

na.method Missing value action for asreml dataframes.
naf MBF example
naf31H naf marker scores
naf32H naf marker scores
nassau Clone data.
nassau.grm Genetic relationship matrix.
nassau.snp Genetic marker scores.
nin89 Advanced breeding trial.

-- O --

oats Split plot design.
orange Tree circumference.
own User-defined variance models.

-- P --

plot Plot diagnostics for an asreml object.
plot.asreml Plot diagnostics for an asreml object.
plot.varioGram Plot a variogram.
pol Model term constructor functions.
pow Model term constructor functions.
predict.asreml Predict linear functions of effects.
print.asreml.predict Print predictions.
print.wald Print a wald object.

-- R --

rats Reproductive study on rats
resid Extract model residuals.
residuals.asreml Extract model residuals.
rice Rice bloodworms.
riceMV Rice bloodworms (multivariate form).
rr General structure variance models.

-- S --

sar Time series type variance models.
sar2 Time series type variance models.
sar2h Time series type variance models.
sar2v Time series type variance models.
sarh Time series type variance models.
sarv Time series type variance models.
sfa General structure variance models.
shf Slate Hall farm wheat variety trial.
sp2mat Convert sparse matrix.
sp2Matrix Convert sparse matrix.
sph Metric based models in two dimensions.
sphh Metric based models in two dimensions.
sphv Metric based models in two dimensions.
spl Model term constructor functions.
splinek Spline knot points.
str General variance structures.
Subset Subset a factor.
summary Summarize an asreml object
summary.asreml Summarize an asreml object

-- T --

timeSeries Time series type variance models.
tr Trace convergence.
tr.asreml Convergence trace for asreml objects.

-- U --

Units Unit level numbers.
unstructured General structure variance models.
update Update an asreml model.
update.asreml Update an asreml model.
us General structure variance models.

-- V --

varioGram Empirical variogram method.
varioGram.asreml Empirical variogram constructor.
vcm.lm Specify constraints among variance parameters.
vm Known variance structures.
voltage Voltage regulators
vpc.char Variance parameter constraint codes
vpredict Functions of variance parameters.
vpt.char Variance parameter type codes

-- W --

wald Wald statistics method.
wald.asreml Wald test constructor for asreml objects.
wheat Wheat variety trial
wolfinger Growth curve study on rats